Use of ctDNA in identifying an actionable BRAF mutation in stage 4 metastatic melanoma

  1. Charlotte Bennett 1,
  2. Sian Morgan 2,
  3. Karam Aboud 1 and
  4. Ricky Dylan Frazer 1
  1. 1 Oncology, Velindre University NHS Trust, Cardiff, UK
  2. 2 Oncology, All Wales Medical Genetics Service, Cardiff, UK
  1. Correspondence to Dr Charlotte Bennett; charlotte.bennett2@wales.nhs.uk

Publication history

Accepted:06 Jun 2023
First published:22 Jun 2023
Online issue publication:22 Jun 2023

Case reports

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Abstract

The identification of genetic variants in melanoma has enabled the development of targeted therapies. Under the National Institute for Health and Care Excellence (NICE) guidance, patients with BRAF V600E variant are eligible for BRAF and MEK inhibitor therapy. For those with advanced or highly symptomatic disease, a rapid response to treatment is often seen. Current practice relies on tissue biopsy to perform immunohistochemistry (IHC) or next generation sequencing (NGS) to identify these variants; however, this can take up to 2 weeks. In patients with widespread disease, rapid initiation of treatment can be lifesaving.

We describe a case in which hotspot circulating tumour DNA (ctDNA) analysis confirmed BRAF variant 6 days prior to biopsy results. This was utilised to expedite treatment initiation and symptomatically, the patient had initial improvement within a few days.

This article demonstrates the potential value of ctDNA analysis and the need for further research into this as an alternative to NGS for patients with rapidly progressive disease.

Background

The incidence of malignant melanoma has continually increased over the last several decades.1 It is currently the fifth most common cancer in the UK, and a significant public health concern, with an estimated 17 000 new cases diagnosed annually.2 Fair skin and exposure to UV light are major risk factors.3 Melanoma arises from melanocytes, pigment containing cells, and is most commonly cutaneous, though extracutaneous forms, including mucosal, leptomeningeal and ocular are also seen.4 Between 2017 and 2019, approximately 2300 deaths in the UK were directly attributable to melanoma.2

Across different cancer sites, there are an increasing number of actionable genetic variants meaning that there is a move towards next generation sequencing (NGS). Within the tumour landscape for melanoma, numerous variants of significance have been identified. Approximately 40% of cutaneous melanomas contain BRAF (OMIM 164757) variant, causing activation of downstream signalling in the mitogen-activated protein kinase (MAPK) pathway. V600E is described most frequently but V600K, V600R, V600D and other rarer variants are also seen.5 Currently, analysis for BRAF, KIT, and NRAS is recommended by NICE through IHC to rapidly assess for BRAF V600E or tissue analysis using NGS.6 The results influence clinical decision making, as patients can be treated with immunotherapy or a combination of BRAF and MEK inhibitors depending on their tumour landscape. Only patients with actionable BRAF variants are eligible for treatment with the latter targeted therapies.

Case presentation

A female patient in her early 70s presented to her general practitioner with a mass in the right groin. CT abdomen and pelvis showed extensive malignancy, including nodal disease in the right groin, right pelvis and peritoneum, as well as liver metastases, multiple lung metastases and possible splenic metastasis.

She had been treated 12 years earlier for subungual melanoma with a right third toe amputation. No adjuvant treatment was given, and 5-year surveillance was completed without evidence of recurrence. No new primary malignancy was identified and a melanoma recurrence was clinically diagnosed.

Original tissue from the amputation of the toe was requested but genetic analysis for BRAF on the sample was unsuccessful due to the poor quality of the extracted DNA from the historical block.

Concurrently, a right groin node biopsy was taken and after 5 days, metastatic melanoma was histologically confirmed. At this point, hotspot BRAF circulating tumour DNA (ctDNA) analysis was requested and within 30 hours, the result was returned demonstrating a BRAF c.1799T>A p.(Val600Glu) variant also known as V600E. The patient was contacted same day, attended oncology and was consented to commence dabrafenib and trametinib. Within days, the patient reported an initial improvement symptomatically. A further 6 days after the hotspot ctDNA result, NGS confirmed concordance of BRAF variant from the nodal biopsy.

Discussion

Those who present with aggressive, quickly progressing melanoma can rapidly respond to BRAF and MEK inhibitors within a few days, meaning that commencing this treatment promptly can be a lifesaving intervention. However, completion of the diagnostic pathway can take up to 2 weeks; from tissue sampling, to the pathologist retrieving the formalin-fixed, paraffin-embedded (FFPE) block, to receiving the BRAF result. This is a relatively long time for patients who have a heavy burden of metastatic disease as this cohort can significantly deteriorate while awaiting the test result. These patients may suffer poorer outcomes due to the current standard of testing. Furthermore, current guidance suggests that we should not perform BRAF analysis for any patient with a lower stage than stage 2a.6 For the cohort of patients who later relapse, this guidance means those with an early stage at their original presentation will not have a BRAF result to action when required.

Liquid biopsies are an emerging tool in oncological practice to guide treatment decisions, monitor disease status and prognosticate.7 Through venepuncture, a blood sample can be collected and analysed for the presence of circulating tumour cells or ctDNA. The volume of ctDNA identified generally correlates with overall disease burden.8 In non-small cell lung cancer, there is already some movement towards using NHS commissioned hotspot ctDNA prior to attempting biopsy, in order to identify actionable epidermal growth factor receptor (EGFR) variants quickly.9 There has, however, been little or no use of this in melanoma patients and NICE does not currently recommend the use of hotspot ctDNA biomarkers as routine practice in the diagnostic pathway for melanoma.6 Despite this, there is a growing body of evidence for ctDNA use to guide treatment decisions. Recent European Society for Medical Oncology (ESMO) recommendations acknowledge the value of this sample type in the time critical setting, or when tissue diagnosis is unsuccessful or unattainable.7 Increasingly, it is being explored as an alternative method for analysing BRAF status in melanoma. Although the time required to process a result for IHC can be comparable to ctDNA, ctDNA analysis can demonstrate numerous V600 variants in contrast to IHC assessing for V600E alone.10 Further benefits of ctDNA include the representation of tumour heterogeneity,11 a limitation of tissue biopsy, and the minimally invasive nature of the investigation. Advanced malignancy in situ is often unresectable and can be in a technically challenging location for tissue biopsy; sampling for a blood biomarker is technically easier. In addition, there is potential benefit for patients where BRAF was not performed on the original tissue, or in cases like ours, where issues later arise during tissue analysis. Sacco et al 8 recently reviewed the diagnostic performance of 14 trials and reported sensitivity to be variable, though generally acceptable; overall specificity was good.8 As always, limitations in a diagnostic technique must be appreciated by the decision-making clinician, in order to ensure safe and robust decision making in the best interests of the patient.7

As a single case, there are limitations to be recognised. Prior to implementation in routine NHS diagnostic practice for melanoma, further refinement of methods is required to ensure valid, reliable and standardised testing technologies across laboratories are adopted and formal assessment of cost-effectiveness considered. In a recent study, results were obtained within 120 min of venepuncture; the time from collection to centrifugation of the samples was less than 1 hour.12 Rapid turnaround of results would be resource intensive, and review of local pathways would be necessary to consider if this could be consistently achieved.

In this article, we describe the use of hotspot ctDNA analysis, where tissue BRAF analysis initially failed. This directly influenced early treatment of a patient clinically deteriorating from the burden of their progressing malignancy. We believe the use of this approach requires further consideration to see if it could provide an alternative within the diagnostic cancer pathway for hotspot BRAF testing in patients where treatment is time critical.

Learning points

  • Patients with BRAF variant melanoma can have a response to treatment with BRAF and MEK inhibitors within days.

  • Circulating tumour DNA (ctDNA) is an increasingly used sample type that allows rapid identification of genetic variants through blood sampling and has the potential to expedite treatment decisions for patients with rapidly progressing disease.

  • Further work is required to determine the utility of hotspot ctDNA testing within cancer diagnostic pathways for melanoma.

Ethics statements

Patient consent for publication

Acknowledgments

Moira Macdonald and Rachel Dodds are clinical scientists who were involved with the analysis of the manuscript. Anne Cleves is an assistant library manager and information specialist who was involved with design of the manuscript. Michelle Norton is a clinical nurse specialist for melanoma who was involved with the care and support of the patient and family.

Footnotes

  • Contributors CB, SM, KA and RDF were responsible for drafting of the text, sourcing and editing of clinical images, investigation results, drawing original diagrams and algorithms, and critical revision for important intellectual content. CB, SM, KA and RDF gave final approval of the manuscript.

  • Funding The authors have not declared a specific grant for this research from any funding agency in the public, commercial or not-for-profit sectors.

  • Case reports provide a valuable learning resource for the scientific community and can indicate areas of interest for future research. They should not be used in isolation to guide treatment choices or public health policy.

  • Competing interests None declared.

  • Provenance and peer review Not commissioned; externally peer reviewed.

References

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